Chirlmin Joo (Full Professor, BioNanoscience) uses single-molecule fluorescence to study RNA dynamics and CRISPR-Cas. Research: (1) single-molecule FRET and direct RNA imaging — visualizing RNA folding, ribozyme catalysis, and mRNA translation dynamics; (2) CRISPR-Cas mechanism — real-time observation of Cas9 and Cas13 target search and cleavage; (3) nanopore-based protein sensing integration with optical tools. ERC Grant.
Jeroen Kalkman develops optical tomography and spectroscopy methods for biomedical imaging. Research: (1) Fourier-domain OCT including spectroscopic OCT for tissue structural and functional imaging; (2) novel light sources and detectors for skin cancer detection (NWO KIC project NextDeLights); (3) scattering media imaging. His work is relevant to advanced biosensing with optical coherence.
Kapanidis' Gene Machines group develops single-molecule fluorescence methods (including ALEX/FRET and super-resolution microscopy) to observe transcription and other gene-expression machinery in real time in bacteria and viruses, and leverages this toolkit to build ultrasensitive DNA-based biosensors for pathogen and antibiotic-resistance detection.
Kasthuri pioneered automated large-volume serial electron microscopy ('connectomics') to reconstruct complete synaptic wiring diagrams of the brain, and is now exploring synchrotron X-ray and photoemission electron microscopy (with the King lab) to remove imaging-speed bottlenecks and scale reconstructions toward whole-mouse and eventually human brains, comparing development, aging, and species differences. This is squarely the kind of resolution-pushing biological imaging the filter targets, achieving nanometer-scale synaptic resolution across cubic-millimeter-to-whole-brain volumes.
Kelley designs nanostructured electrochemical biosensors -- including antifouling 'spiky' nanoelectrodes -- for amplification-free, point-of-care detection of nucleic acids and proteins (e.g. bacterial mRNA), aiming to replace slow, lab-based amplification assays with rapid electronic diagnostics deployable at the bedside.
Keyser's group uses solid-state and DNA-origami nanopores for resistive-pulse single-molecule sensing, with a current focus on multiplexed RNA identification using barcoded DNA nanostructures, in close collaboration with Jeremy Baumberg's plasmonics group. The lab combines physics, nanofabrication and molecular biology to push nanopore sensing toward diagnostic applications.
Klenerman develops and applies single-molecule fluorescence and scanning-probe methods (including nanopipette scanning ion-conductance microscopy and a single-objective oblique-plane light-sheet microscope) to study protein misfolding and aggregation in neurodegenerative disease, alongside his earlier work co-inventing next-generation DNA sequencing.
Gijsje Koenderink (Full Professor, BioNanoscience) investigates active and passive mechanics of the cytoskeleton. Research: (1) active matter — motor-filament composite networks generating spontaneous mechanical activity; (2) cell mechanics — cytoskeletal contributions to cell shape, migration, and division; (3) biomaterials — designing synthetic cytoskeletal analogues; (4) optical tweezers and AFM rheology of reconstituted networks. Spinoza Prize 2021. ERC Advanced Grant.
Prof. Kozorovitskiy (Neurobiology) studies neuromodulation and plasticity in the striatum and basal ganglia, with a distinctive emphasis on developing and applying advanced optical imaging methods. Imaging technique innovations: (1) Oblique plane illumination (OPI / scanned oblique plane illumination, SOPi) microscopy — a single-objective light-sheet technique achieving tilt-invariant volumetric imaging for rapid 3D capture of fluorescently labeled neural structures without mechanical tilting; (2) Two-photon fluorescence imaging and two-photon glutamate/neuromodulator photorelease for single-synapse resolution in live tissue; (3) Near-infrared genetically-encoded calcium indicators (with Verkhusha group) for in vivo multi-color neural recording with reduced photobleaching. The lab's technical contributions are centered on extending the spatial and volumetric resolution of live-tissue fluorescence imaging. Irving M. Klotz Research Professor of Neurobiology; Beckman Young Investigator 2015.
Designs programmable DNA nanodevices as quantitative fluorescent reporters to map second messengers in real time inside specific organelles of living cells. Research directions: (1) DNA origami ion-sensing nanodevices for pH, Cl-, Ca2+, HOCl, and membrane voltage with single-organelle addressability; (2) targeting nanodevices to endosomes, lysosomes, mitochondria, and ER to dissect organelle biology and disease mechanisms; (3) in vivo deployment in C. elegans and Drosophila. NIH Director's Pioneer Award 2022.