Tags - (6) DNA nanotechnology biosensing

Department(s)/lab(s): Physics (Biological Physics) | Nucleic Acid Nanotechnology Group @ Oxford
Summary:

Bath's group designs and assembles DNA- and RNA-based molecular machines and nanostructures (including DNA origami 'molecular signposts' for cryo-electron tomography), aiming to create probes of cellular structure and function and new disruptive technologies for molecular manufacturing.

Department(s)/lab(s): Biological Engineering | Bathe Lab (Laboratory for Nucleic Acid Nanotechnology) @ MIT
Summary:

PREFERRED. Bathe's lab programs DNA and RNA into custom 2D/3D nanoscale materials (DNA origami via the DAEDALUS algorithm) for applications spanning vaccines/therapeutics, massive molecular data storage, and — most relevant here — using DNA as a programmable scaffold to organize photonic and quantum-optical elements (mimicking quantum coherence effects seen in photosynthetic light-harvesting) and single-molecule optical biosensing.

Department(s)/lab(s): Physics & Astronomy – Biophysics & London Centre for Nanotechnology | Hoogenboom Lab (High-Speed AFM and Nanoscale Biophysics) @ UCL
Summary:

Hoogenboom leads a biophysics group at UCL specializing in high-speed atomic force microscopy. Research directions: (1) High-speed AFM — imaging conformational dynamics of DNA, proteins (including membrane channels), and chromatin at ms time resolution and sub-nm spatial resolution in aqueous conditions; (2) Nuclear pore complex — mapping transport selectivity and structure of NPCs in native nuclear envelopes using AFM; (3) Antimicrobial mechanisms — imaging membrane disruption by antimicrobial peptides in real time; (4) AFM-based force spectroscopy — measuring single-molecule interaction forces in chromatin and protein assemblies. Strong relevance to biological sensing at the single-molecule level.

Department(s)/lab(s): Physics (Cavendish Laboratory) | Keyser Lab @ Cambridge
Summary:

Keyser's group uses solid-state and DNA-origami nanopores for resistive-pulse single-molecule sensing, with a current focus on multiplexed RNA identification using barcoded DNA nanostructures, in close collaboration with Jeremy Baumberg's plasmonics group. The lab combines physics, nanofabrication and molecular biology to push nanopore sensing toward diagnostic applications.

Department(s)/lab(s): Chemistry | Mirkin Research Group @ Northwestern
Summary:

Mirkin invented spherical nucleic acids (SNAs) -- gold nanoparticles densely coated with a radial shell of oligonucleotides -- and their 'nanoflare' derivatives, which enter live cells without transfection agents and light up sequence-specifically upon binding intracellular mRNA, enabling live-cell gene-expression biosensing, circulating-tumor-cell isolation, and simultaneous mRNA detection/regulation. This label-based intracellular biosensing platform is offered as a borderline but well-established inclusion under the biosensing/dye-based imaging criterion.

Department(s)/lab(s): School of Physics / School of Chemistry | Wickham DNA Nanotechnology Group @ USyd
Summary:

Wickham builds DNA origami nanostructures — programmable, self-assembling scaffolds with nanometre-precision addressability — and uses them as molecular machines, drug-delivery vehicles and, most relevantly, as rulers and probes for single-molecule measurement. DNA origami is the standard platform for DNA-PAINT super-resolution and for positioning fluorophores, nanoparticles or spin labels at defined separations, and her group works on dynamic, reconfigurable devices that respond to biological triggers. Positioned against the established body of NV-ensemble quantum sensing work — DEER, nanoscale NMR and T1 relaxometry protocols operating at pT/sqrt(Hz) field sensitivity — DNA origami is the leading candidate technology for positioning target molecules at a controlled standoff from a near-surface NV ensemble, which is the central geometric problem in pushing NV nanoscale NMR and DEER from pT/sqrt(Hz) ensembles down to single-molecule sensitivity. Genuinely complementary skill set for a quantum-sensing candidate.